Passing electricity through a gas at very low pressure in a discharge tube gave the first evidence of particles smaller than atoms. Cathode rays travel from the cathode and are streams of electrons. Positive rays (canal rays) pass through holes in a perforated cathode and are positive ions of the gas in the tube.
J. J. Thomson measured the charge to mass ratio (e/m) of the electron, and Millikan measured its charge using charged oil drops. Together these give its mass. Chadwick discovered the neutron in 1932.
Rutherford fired α-particles at a thin gold foil. Most went straight through, a few were deflected and very few bounced back. So the atom is mostly empty space with a tiny, dense, positive nucleus.